Modeling in Systems Biology The Petri Net Approach /

• Corporate Author: SpringerLink (Online service)
• Other Authors: Koch, Ina (Editor), Reisig, Wolfgang (Editor), Schreiber, Falk (Editor)
• Format: Electronic eBook
• Language: English
• Published: London : Springer London : Imprint: Springer, 2011.
• Series: Computational Biology, 16
• Subjects: Computer science.; Bioinformatics.; Systems biology.; Computer Science.; Computational Biology/Bioinformatics.; Systems Biology.

The emerging, multi-disciplinary field of systems biology is devoted to the study of the relationships between various parts of a biological system, and computer modeling plays a vital role in the drive to understand the processes of life from an holistic viewpoint. Advancements in experimental tech...

Table of Contents:

• Part I: Foundations
• Introduction
• Biochemical Fundamentals
• Petri Nets
• Part II: Modeling Techniques
• Discrete Modeling
• Modeling Genetic Regulatory Networks
• Hybrid Functional Petri Net with Extension for Dynamic Pathway Modeling
• Stochastic Modeling
• Quantitative Analysis
• Fuzzy Modeling
• Part III: Biochemical Applications
• Topological Analysis of Metabolic and Regulatory Networks
• Analysis of Dynamical Models of Signaling Networks with Petri Nets and Dynamic Graphs
• A Modular, Qualitative Modeling of Regulatory Networks Using Petri Nets
• A Case Study of HFPN Simulation: Finding Essential Roles of Ror Gene in the Interaction of Feedback Loops in Mammalian Circadian Clock
• Prediction of Network Structure.