Table of Contents:
  • Tracing the Early Cell Divisions of Mouse Embryos by Single Cell RNA-Seq
  • Successes and Failures of Elegant Algorithms in Computational Biology
  • Modeling without Borders: Creating and Annotating VCell Models Using the Web
  • Touring Protein Space with Matt
  • Fixed-Parameter Algorithm for General Pedigrees with a Single Pair of Sites
  • Analysis of Temporal-spatial Co-variation within Gene Expression Microarray Data in an Organogenesis Model
  • Human Genome Annotation
  • Extensions and Improvements to the Chordal Graph Approach to the Multi-state Perfect Phylogeny Problem
  • Analysis of Gene Interactions Using Restricted Boolean Networks and Time-Series Data
  • Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features
  • Essential Proteins Discovery from Weighted Protein Interaction Networks
  • Identifying Differentially Abundant Metabolic Pathways in Metagenomic Datasets
  • A Novel Approach for Compressing Phylogenetic Trees
  • Structure of Proximal and Distant Regulatory Elements in the Human Genome
  • Combinatorics in Recombinational Population Genomics
  • Uncovering Hidden Phylogenetic Consensus
  • An Agglomerate Algorithm for Mining Overlapping and Hierarchical Functional Modules in Protein Interaction Networks
  • Fast Protein Structure Alignment
  • Predicting and Analyzing Cellular Networks
  • A Consensus Tree Approach for Reconstructing Human Evolutionary History and Detecting Population Substructure
  • Inferring Evolutionary Scenarios for Protein Domain Compositions
  • Local Structural Alignment of RNA with Affine Gap Model
  • Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees
  • “Master-Slave” Biological Network Alignment
  • Deciphering Transcription Factor Binding Patterns from Genome-Wide High Density ChIP-chip Tiling Array Data
  • The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.